You can make either a full cPanel backup of your entire account, or what it sounds like you'd probably be looking for a partial home directory backup.
Both options are explained in detail in our guide on Creating a website backup in your cPanel.
If your account is over 3GB in size typically using the cPanel backup methods are inefficient and we would recommend creating a backup using FTP in that case.
I hope that answered your question, if you had any other questions at all please let us know.
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